freshmeat.net: Project details for SIGHT

20:05 UTC

[Project]

SIGHT 3.2.0 beta (Default)

Section: Unix

Added: Thu, Feb 13th 2003 06:12 UTC (5 years, 6 months ago)

Updated: Thu, Dec 2nd 2004 11:49 UTC (3 years, 9 months ago)

About:
SIGHT is a code generator set to create a user-defined system of Web robots, realising arbitrary workflow. It generates Web robots that can be based on Stalker algorithm, HTML structure, etc. This task is frequent in bioinformatics.

Release focus: N/A

Changes:
This is a routine evolutionary step from 3.1.0 alpha, being more stable and efficient. If 3.1.0 alpha was not performing as you expected, upgrading is highly recommended.

Author:
Audrius Meškauskas [contact developer]

Homepage:
http://bioinformatics.org/jSight/
Zip:
http://sourceforge.net/[..]72076&package_id=71819&release_id=267311
Mailing list archive:
http://bioinformatics.org/mail/?group_id=210
Mirror site:
http://jsight.sourceforge.net/index_SF.htm
Demo site:
http://sourceforge.net/project/screenshots.php?group_id=72076

Trove categories: [change]
[Development Status] 4 - Beta
[Environment] Win32 (MS Windows), X11 Applications, X11 Applications :: Gnome, X11 Applications :: GTK, X11 Applications :: KDE
[License] OSI Approved :: GNU General Public License (GPL)
[Programming Language] Java
[Topic] Internet :: WWW/HTTP :: Indexing/Search, Internet :: WWW/HTTP :: Site Management, Scientific/Engineering :: Artificial Intelligence, Scientific/Engineering :: Bioinformatics, Software Development :: Code Generators

Dependencies: [change]
jEdit (required)
IzPack 3.6.0 (recommended)
JSch (optional)
WEKA (optional)
[download links]

Project admins: [change]
» Audrius Meškauskas (Owner)

» Rating: (not rated)
» Vitality: 0.00% (Rank 13525)
» Popularity: 0.41% (Rank 14131)

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Branches

Branch Version Last release License URLs

Default 3.2.0 beta 02-Dec-2004 GNU General Public License (GPL)

Releases

Version Focus Date

3.2.0 beta N/A 02-Dec-2004 19:49

3.1.0 alpha Minor feature enhancements 26-Oct-2004 17:52

3.0.0 alpha pre Major feature enhancements 24-Sep-2004 21:59

2.1.0 Initial freshmeat announcement 13-Feb-2003 22:03

Comments

[»] Share your opinion - Sight feedback form available, check boxes only
by Audrius Meškauskas - Nov 1st 2004 06:30:21

Sight is getting more and more complex. It is possible to concentrate further development in many possible directions. Where to focus the attention? You can help us by telling your opinion using this feedback form. The form contains check boxes only and will not take much your time.

--
Audrius Meskauskas

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[»] Sight 3.0.0 alpha released (WSDL, loops, etc)
by Audrius Meskauskas - Sep 11th 2004 16:08:09

Sight 3.0.0 alpha is developed by Audrius Meškauskas as a subsequent stage of the GPL-based Sight project, initially started in Ulm university. This release has several important new features:

Sight now supports workflows, containing loops and confluences. This allows to implement much more variable strategies of the bioinformatical research. Built – in Smith and Waterman search allows searching the local database for the related sequences. Cross platform implementation of WSDL compatible protocol allows to integrate web services using this way of communication. The whole Sight workflow now can be converted into a single Sight agent. Such combined agents are valuable not just as an “elementary units” in more complicated workflows, but also as a simply usable modules for java programmer. Sight now has agents for reading and writing in SwissProt and FASTA formats an can be used as a system to search or classify data in flat files having these formats. Sight provides a “mini environment” to test and create data filters, based on java regular expressions. Improved user environment (for example, possibility to copy/paste a part of workflow) makes creating of workflows easier. XML agent generator supports namespaces. Table agent generator supports turned tables and some cases when the response must be composed from the several tables in the document. Manual landmark marking agent generator now uses regular expressions to specify landmarks. Sight now can work with workflows where the final result is a graph rather than a table. The annotation event listener accepts registers events when two named nodes must be connected by the named link. Generated graphs can be viewed using CytoScape (see http://www.cytoscape.org/). The new version has a large number of the other small improvements and fixed bugs.

This alpha-pre release is still not properly documented. While the user manual is in preparation, we suggest to read the button tool tips and try to understand the general logic of the program. Audrius Meškauskas will also be glad to answer all questions.

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